In a background of innovation-driven development, China requires efficient industrial organizations to develop the capability of independent innovation and to occupy the high-end global industrial chain. Modularized industrial organizations lead to dynamic combinations of production elements. Meanwhile, innovation emerges spontaneously, and is conducive to China’s innovation-driven development. Industrial organizational modularization is a dynamic process merging of product contracts and the elements contracts. Modularization has convergence costs at the early stages; efficient industrial standards can reduce the costs of convergence. AGMM dynamic panel data model is built to test the organizational modularization and industrial impact on strategic emerging industries’ TFP. The empirical study shows that modularization reduces current efficiency but improves efficiency in lag periods. The industrial standards for public goods have a significant positive effect on TFP; but the industrial standards for non-public goods have a negative impact on TFP. The positive impact of the modular degree on the technical efficiency is significant. There is a significant influence of 1G-3G mobile communication standards on the related industries’ TFP. Each industrial environmental factor has different impacts on TFP.